Table of Contents
The Sequence Read Archive (SRA) was created and engineered at the National Center for Biotechnology Information (NCBI, www.ncbi.nlm.nih.gov), National Library of Medicine, National Institutes of Health, Department of Health and Human Services. NCBI is located on the National Institutes of Health campus in Bethesda MD, USA.
The SRA is formerly known as the "Short Read Archive", but in recognition of the long reads now delivered by next generation platforms, the name was changed to "Sequence Read Archive".
The SRA is part of a cluster of sequencing data repositories called the "Trace Archives" (http://0-www.ncbi.nlm.nih.gov.elis.tmu.edu.tw/Traces), and is located under the "Primary Data Archives" at NCBI, which includes GenBank.
The SRA is part of the International Nucleotide Sequence Database Collaboration (INSDC, www.insdc.org). The data model, data transfer protocols, and accession space are shared with the INSDC collaborators: European Bioinformatics Institute (EBI, http://www.ebi.ac.uk) and the DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp).
The sister Sequence Read Archives are:
- European Read Archive (ERA, http://www.ebi.ac.uk/embl/Documentation/ENA-Reads.html)
- DDBJ Read Archive (DRA, http://www.ddbj.nig.ac.jp/sub/trace_sra-e.html)
Normally, when citing a tool in literature, you may indicate the home page of the tool or service as follows: "The NCBI Sequence Read Archive (SRA, http://0-www.ncbi.nlm.nih.gov.elis.tmu.edu.tw/Traces/sra)".
If you wish to more strongly cite the SRA, please use this reference:
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Ostell J, Pruitt KD, Schuler GD, Shumway M, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2008 Jan; 36 (Database issue): D13-21. Epub 2007 Nov 27. PMID: 18045790
Send email to NCBI about the Sequence Read Archive:
The following community group receives announcements about sequence read archival issues and technology: http://tech.groups.yahoo.com/group/trace_archives/
The group is moderated by members of NCBI, EBI, and DDBJ. The group email addresses are:
- Post message:
- List owner:
Current deployment version of SRA is 1.0, released Feb 4, 2009.
The original "provisional" SRA was deployed in August, 2007.